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Answer: DNAStringSet(x, start=, end=) loses quality information
by
stenlana035
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0
Perhaps the hub genes are associated with other variables that have a negative correlation with the immune score rather than the immunologi…
Answer: Model performance for spline modelling of RNA-seq timecourses in edgeR
by
Gordon Smyth
52k
I don't understand your question, because there is no difference between limma or glmFit or glmQLFit in terms of spline modeling or the tes…
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
by
Luca
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0
Perhaps edgeR's upperquartile normalization handles this better, the MA looks a lot more centered at 0
![enter image description here][1]…
Answer: DESeq2 - am I extracting results incorrectly?
by
James W. MacDonald
68k
If I assume that Followup gets converted to T3 and Treatment to LowSug somewhere along the line (and therefore GroupTreatment.Followup is G…
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
by
Luca
•
0
I noticed the dual populations as well, when using csaw this is controlled for. Regarding the DE profile, given this disease condition we e…
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